Digitizing 3D landmarks in R

Available on

R/shapeQTL — shape QTL mapping experiment using R

R package to map QTL of shape. Used in Maga et al (2015 Frontiers in Physiology) and for colour loci mapping in Huber et al (2015 Heredity)

→ Available on

R/BagNet — Resample model averaging for genomewide association mapping

R script using C codes to computes bootstrap aggregation modelling with GWA data. This code was used in Ledur et al (2009 BMC Proceedings ). Prior selection of putative loci as used in Ledur et al. (2009) is not compulsory and modelling (forward selection) may be done on complete set of SNPs at each pass. Also, phenotypic covariates may be selected on the same pass.

→ Version 0.3 Available on request

MDA — Morphospace-Disparity Analysis

Computes bootstrap standard error on disparity, performs rarefaction and bootstrap tail test (Navarro 2003 Computers and Geosciences )

Legacy code, no longer maintained
→ Matlab version 1.2-03
→ R version 1.2-03, simple R transcription of the Matlab code available on request