Genetics of shape

Montillot, C., Skutunova, E., Ayushma, Dubied, M., Lahmar, A., Nguyen, S., Peerally, B., Prin, F., Duffourd, Y., Thauvin-Robinet, C., Duplomb, L., Wang, H., Ansar, M., Faivre, L., Navarro, N., Minocha, S., Collins, S.C., Yalcin, B. 2023 . Characterization of Vps13b-mutant mice reveals neuroanatomical and behavorial phenotypes with females less affected. Neurobiology of Disease 185: 106259.

Li, Q., Chen, J., Faux, P., Delgado, M.E., Bonfante, B., [30 auths], Navarro, N., Wang, S., Adhikari, K., Ruiz-Linares, A. 2023 . Automatic landmarking identifies new loci associated with face morphology and implicates Neanderthal introgression in human nasal shape. Communications biology 6: 481.

Monna, F., Messaoud, R.B., Navarro, N. , Baillieul, S., Sanchez, L., Loiodice, C., Tamisier, R., Faure, M.J., Pepin, J.L. 2022 . Machine learning and geometric morphometrics to predict obstructive sleep apnea from 3D craniofacial scans. Sleep Medicine 95: 76-83.

Zhang, M., Wu, S., Du, S., Qian, W., Chen, J., Qiao, L., Yang, Y., Tan, J., Yuan, Z., Peng, Q., Liu, Y., Navarro, N. , Tang, K., Ruiz-Linares, A., Wang, J., Claes, P., Jin, L., Li, J., Wang, S. 2021 Genetic mechanisms underlying differences in facial morphology in East Asian and European populations. Nature Genetics 54: 403-411.

Bonfante, B., Faux, P., Navarro, N. et al. 2021 A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation. Science Advances 7: eabc6160. Suppl. mat

Varón-González, C., Pallares, L.F., Debat, V. and Navarro, N. 2019 Mouse skull mean shape and shape robustness rely on different genetic architectures and different loci. Frontiers in Genetics 10: 64.

Morris, J., Navarro, N., Rastas, P., Rawlins, L.D., Sammy, J.S., Mallet, J. and Dasmahapatra, K.K. 2019. The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution. Heredity 123: 138-152.

Varón-González,C and Navarro, N. 2018. Epistasis regulates the developmental stability of the mouse craniofacial shape. Heredity 122: 501-512.

Varón-González, C. and Navarro, N. 2018 Disentangling directional and fluctuating asymmetry in a genome-wide association study. In: Geometric morphometrics. Trends in Biology, Paleobiology and Archeology, Rissech et al. (eds), Monografies del SERP, Barcelona, pp. 117-124.

Navarro, N., and Maga, A.M. 2018. Genetic mapping of molar size relations identifies inhibitory locus for third molars in mice. Heredity 121: 1-11.

Navarro, N., and Maga, A.M. 2016. Does 3D Phenotyping Yield Substantial Insights in the Genetics of the Mouse Mandible Shape? Genes, Genomes, Genetics (G3) 6: 1153-1163.

Maga, A.M., Navarro, N., Cunningham, M.C. and Cox, T.C. 2015. Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico. Frontiers in Physiology 6: 92. doi:10.3389/fphys.2015.00092.

Huber, B., Whibley, A., Le Poul, Y., Navarro, N, Martin, A., Baxter, S., Shah, A., Gilles, B., Wirth, T., McMillan, W.O. and Joron, M. 2015. Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity 114: 515–524.

Klingenberg, C.P. and Navarro, N. 2012. Development and genetics of the mouse mandible: a model system for complex morphological structures Macholan et al. (eds.). Evolution of the House Mouse. Cambridge Series in Morphology and Molecules.

Debat, V., Bloyer, S., Faradji, F., Gidaszewski, N., Navarro, N., Orozco-terWengel, P., Ribeiro, V., Schlötterer, C., Deutsch, J.S. and Peronnet, F. 2011. Developmental Stability: A Major Role for Cyclin G in Drosophila melanogaster. PLoS Genetics, 7(10): e1002314.

Navarro, N., and Klingenberg, C.P. 2007. Mapping multiple QTLs of geometric shape of the mouse mandible. In S. Barber, P.D. Baxter and K.V. Mardia (eds), Systems Biology and Statistical Bioinformatics, p. 125-128. Leeds, Leeds University Press.

Navarro, N., and Klingenberg, C.P. 2006. Combining geometric morphometrics and genomic data: The genetics of mouse mandible shape. In S. Barber, P.D. Baxter, K.V. Mardia and R.E. Walls (eds), Interdisciplinary Statistics and Bioinformatics, p. 63-66. Leeds, Leeds University Press.

Statistical genetics

Yang, B., Navarro, N., Noguera, J.L., Muñoz, M., Guo, T.F., Yang, K.X., Ma, J.W., Folch, J.M., Huang, L.S. and Pérez-Enciso, M. 2011. Building phenotype networks to improve QTL détection: a comparative analysis of fatty acid and fat traits in pigs. Journal of Animal Breeding and Genetics, 128: 329–343.

Ledur, M.C., Navarro, N. and Pérez-Enciso, M. 2010. Large scale SNP genotyping in crosses between outbred lines: How useful is it? Heredity 105: 173-182.

Ledur, M.C., Navarro, N. and Pérez-Enciso, M. 2009. Data modeling as a main source of discrepancies in single and multiple marker association methods. BMC Proceedings 2

Spatial processes in ecology and evolution

Fabri‐Ruiz, S., Navarro, N., Laffont, R., Danis, B., and Saucède, T. 2020. Diversity of Antarctic echinoids and ecoregions of the Southern Ocean. Biology Bulletin 47: 683-698.

Fabri‐Ruiz, S., Danis, B., Navarro, N., Koubbi, P., Laffont, R., and Saucède, T. 2020. Benthic ecoregionalization based on echinoid fauna of the Southern Ocean supports current proposals of Antarctic Marine Protected Areas under IPCC scenarios of climate change. Global change biology 26: 2161-2180.

Khimoun, A, Peterman, W, Eraud, C, Faivre, B, Navarro, N, and Garnier, S. 2017. Landscape genetic analyses reveal fine‐scale effects of forest fragmentation in an insular tropical bird. Molecular Ecology .

Villier, L. and Navarro, N. 2004. Biodiversity dynamics and their driving factors during the Cretaceous diversification of Spatangoidea (Echinoidea, Echinodermata). Palaeogeography, Palaeoclimatology, Palaeoecology, 214: 265-282.

Miscellaneous

Monna, F., Marques, A. N. Jr., Guillon, R., Losno, R., Couette, S., Navarro, N., Dongarra, G., Tamburo, E., Varrica, D., Château, C., Nepomuceno, F.O. 2017. Perturbation vectors to evaluate air quality using lichens and bromeliads. A Brazilian case study. Environmental Monitoring and Assessment 189: 566.

Guigue, J., Mathieu, O., Lévêque, J., Mounier, S., Laffont, R., Maron, P.-A., Navarro, N., Chateau, C., Amiotte-Suchet. P., and Lucas, Y. 2014. A comparison of extraction procedures for water-extractable organic matter in soils. European Journal of Soil Science 65: 520-530.

Navarro, N. 2005. Incorporating δ18O values of past waters in the calibration of radiocarbon dating. Geology 33(5): 369-372.

Semlali, R. M., Dessogne, J.-B., Monna, F., Bolte, J., Azimi, S., Navarro, N., Denaix, L., Loubet, M., Chateau and van Oort, F. 2004. Modeling lead input and output in soils using lead isotopic geochemistry. Environmental Sciences and Technology, 38(5): 1513-1521.

Evolution and development of shapes

Dubied, M., Montuire, S., Navarro, N. 2022 Functional constraints channel mandible shape ontogenies in rodents. Royal Society Open Science 9:220352.

Dubied, M., Montuire, S., Navarro, N. 2021 Commonalities and evolutionary divergences of mandible shape ontogenies in rodents. Journal of Evolutionary Biology

Oudot, M., Neige, N., Laffont, R, Navarro, N., Khaldi, A.Y., Crônier, C. 2019 Functional integration for enrollment constrains evolutionary variation of Phacopidae trilobites despite developmental modularity. Palaeontology 62: 805-821.

Labonne, G., Navarro, N., Laffont, R., and Montuire S. 2014. Developmental integration in a functional unit: deciphering processes from adult dental morphology. Evolution and Devolopment 16: 224-232.

Labonne, G., Laffont, R., Renvoisé, E., Jebrane, A., Labruere, C., Chateau-Smith, C., Navarro, N. and Montuire S. 2012. When less means more: evolutionary and developmental hypotheses in rodent molars. Journal of Evolutionary Biology 25: 2102-2111.

Laffont, R., Renvoisé, E., Navarro, N., Alibert, P. and Montuire, S. 2009. Morphological modularity and assessment of developmental processes within the vole dental row (Microtus arvalis, Arvicolinae, Rodentia). Evolution and Development 11: 302-311.

Navarro, N. 2003. MDA : a MATLAB-based program for morphospace-disparity analysis. Computers and Geosciences, 29: 655-664.

Spatial processes in the evolution of shapes

Jablonska, A., Navarro, N. , Laffont, R., Wattier, R., Pešić, V., Zawal,A., Vukić, J., Grabowski, M. 2021. An integrative approach challenges species hypotheses and provides hints for evolutionary history of two Mediterranean freshwater palaemonid shrimps (Decapoda: Caridea). The European Zoological Journal 88: 900-924.

Montuire, S., Royer, A., Lemanik, A., Gilg, O., Sokolova, N., Sokolov, A., Desclaux, E., Nadachowski, A., and Navarro, N. 2019. Molar shape differentiation during range expansions of the collared lemming (Dicrostonyx torquatus) related to past climate changes. Quaternary Science Reviews 221: 105886.

Arnoux, E., Eraud, C., Navarro, N., Tougard, C., Thomas, A., Cavallo, F., Vetter, N., Faivre, B. and Garnier, S. 2014. High levels of phenotypic and genetic differentiation at a very small geographic scale in a bird species, the forest thrush Turdus lherminieri. Heredity 113: 514–525

Lefebvre, B., Eble, G.J., Navarro, N. and David, B. 2006. Diversification of atypical Paleozoic echinoderms: A quantitative survey of stylophoran disparity, diversity, and geography. Paleobiology 32(3): 483-508.

Navarro, N., Neige, P. and Marchand, D. 2005. Biological invasions as a source of morphological constraints and novelties? The diversification of the early Cardioceratidae (Ammonoidea; Middle Jurassic). Paleobiology 32(1): 98-116.

Neige, P., David, B., Eble, G.J., Lefebvre, B., Marchand, D. and Navarro, N. 2005. Dynamique macroévolutive de la Biodiversité. uB Sciences 1: 44-49.

Ecology and Evolution of voles

Navarro, N., Montuire, S., Laffont, R., Steimetz, E., Onofrei, C. and Royer, A. 2018. Identifying past remains of morphologically similar vole species using molar shapes Quaternary 1: 0020.

Calandra, I., Labonne, G., Mathieu, O., Henttonen, H., Lévêque, J., Milloux, M.-J., Renvoisé, E., Montuire, S., and Navarro, N. 2015. Isotopic partitioning by small mammals in the subnivium. Ecology and Evolution DOI: 10.1002/ece3.1653

Navarro, N., Lécuyer, C., Montuire, S., Langlois, C. and Martineau, F. 2004. Oxygen isotope compositions of phosphate from arvicoline teeth and Quaternary climatic changes, Gigny, French Jura. Quaternary Research, 6(2): 172-182.

Navarro, N., Zatarain, X. and Montuire, S. 2004. Effects of morphometric descriptor changes on statistical classification and morphospaces. Biological Journal of the Linnean Society, 83: 243-260.

Numerical humanities

Monna, F., +Rolland, T., Denaire, A., Navarro, N. , Granjon, L., Barbé, R., Chateau-Smith, C. 2021. Deep learning to detect built cultural heritage from satellite imagery.-Spatial distribution and size of vernacular houses in Sumba, Indonesia. Journal of Cultural Heritage 52: 171-183

Rolland, T., Monna, F., Magail, J., Esin, Y., Navarro, N. , Wilczek, J., Gantulga, J.-O., Chateau-Smith, C. 2021. Documenting carved stones from 3D models. Part II—Ambient occlusion to reveal carved parts. Journal of Cultural Heritage 49: 28-37.

Wilczek, J., Monna, F., Navarro, N. , Chateau-Smith, C. 2021. A computer tool to identify best matches for pottery fragments. Journal of Archaeological Science: Reports 37: 102891.

Lkebir, N., Rolland, T., Monna, F., Masrour, M., Bouchaou, L., Fara, E., Navarro, N., Wilczek, J., Chateau-Smith, C., and Pérez-Lorente, F. 2020. Anza palaeoichnological site, Late Cretaceous, Morocco. Part III: Comparison between traditional and photogrammetric records. Journal of African Earth Sciences 172: 103985.

Monna, F., Magail, J., Rolland, T., Navarro, N., Wilczek, J., Gantulga, J.O., Esin, Y., Granjon, L., Allard, A.C., and Chateau-Smith, C. 2020. Machine learning for rapid mapping of archaeological structures made of dry stones–Example of burial monuments from the Khirgisuur culture, Mongolia. Journal of Cultural Heritage43: 118–128.

Wilczek, J., Monna, F., Jébrane, A., Labruère-Chazal, C., Navarro, N., Couette, S., Chateau Smith, C. 2018 Computer-assisted orientation and drawing of archaeological pottery. Journal on Computing and Cultural Heritage, 11: 22.

Monna, F., Esin, Y., Magail, J., Granjon, L., Navarro, N., Wilczek, J., Saligny, L., Couette, S., Dumontet, A., and Chateau C. 2018. Documenting carved stones by 3D modelling – Example of Mongolian deer stones.Journal of Cultural Heritage DOI: 10.1016/j.culher.2018.04.021

Gabillot, M., Monna, F., Alibert, P., Bohard, B., Camizuli, E., Dommergues, C.-H., Dumontet, A., Forel, B., Gerber, S., Jebrane, A., Laffont, R., Navarro, N., Specht, M., and Chateau, C. 2017. Productions en série vers 1500 avant notre ère ; notions de règles de fabrication au Bronze moyen entre la Manche et les Alpes à la lumière d’une étude morphométrique. Bulletin de la Société de Préhistoire Française 10: 19-31.

Wilczek, J., Monna, F., Gabillot, M., Navarro, N., Rusch, L. and Chateau C. 2015. Unsupervised model-based clustering for typological classification of Middle Bronze Age flanged axes. Journal of Archaeological Science: Reports 3: 381-391.

Wilczek, J., Monna, F., Barral, P., Burlet, L., Chateau, C., and Navarro, N. 2014. Morphometrics of second Iron Age ceramics: strength, weakness, and comparison with traditional typology. Journal of Archaeological Sciences 50: 39-50.